student publicaitons

The research project of Neva Watson, Microbiology and Immunology PhD student, as well as her image of skeletal muscle calcification caused by a virus, made the cover of the Journal of Immunology . She is a student in the lab of Paul Massa, PhD, professor of Microbiology & Immunology, and professor of Neurology.

Student Publications

The following are recent first-author publications in books and professional journals by Upstate students. Doctoral students in the College of Graduate Studies who finished in 2011-2012, 2012-2013 and 2013-2014 published on average 4.4 publications (with 2.1 being first author) that are indexed on Pub Med. On average, these publications have been cited 26 times.

2017

Subhrajit Banerjee and P.M. Kane. Direct interaction of the Golgi V-ATPase a-subunit isoform with PI(4)P drives localization of Golgi V-ATPases in yeast . Mol Biol Cell [Epub ahead of print]
Saptarshi Biswas et al. Laminin-Dependent Interaction between Astrocytes and Microglia: A Role in Retinal Angiogenesis. Am J Pathol. [Epub ahead of print]
Karen I. Cyndari et al. Peri-Implant Distribution of Polyethylene Debris in Postmortem-Retrieved Knee Arthroplasties: Can Polyethylene Debris Explain Loss of Cement-Bone Interlock in Successful Total Knee Arthroplasties? J Arthroplasty [Epub ahead of print]
Avik Dutta et al. Hmga2 promotes the development of myelofibrosis in Jak2V617F knock-in mice by enhancing TGF-β1 and Cxcl12 pathways. Blood [Epub ahead of print]
Ivayla I Geneva et al. Untangling ciliary access and enrichment of two rhodopsin-like receptors using quantitative fluorescence microscopy reveals cell-specific sorting pathways. Mol Biol Cell 15;28(4):554-566, 2017.
Dandan Guo et al.Riboflavin-containing telodendrimer nanocarriers for efficient doxorubicin delivery: High loading capacity, increased stability, and improved anticancer efficacy . Biomaterials 141:161-175, 2017.
Andrew E. Jacob et al. Paxillin genes and actomyosin contractility regulate myotome morphogenesis in zebrafish. Dev Biol [Epub ahead of print
Fatoumata Jobe et al. Deletion of Ptpn1 induces myeloproliferative neoplasm . Leukemia [Epub ahead of print]
Joshua M. Karchin et al. Small Molecule-Induced Domain Swapping as a Mechanism for Controlling Protein Function and Assembly. Sci Rep. 7: 44388, 2017.
Dawn B. Lammert et al. The de novo Autism Spectrum Disorder RELN R2290C Mutation Reduces Reelin Secretion and Increases Protein Disulfide Isomerase Expression. J Neurochem. [Epub ahead of print]
Kelly Ledford et al. Distinct cis-acting regions control six6 expression during eye field and optic cup stages of eye formation. Dev Biol. 2017 Apr 21;. [Epub ahead of print]
Matthew R. Miller et al. Non-canonical activity of the podosomal formin FMNL1γ supports immune cell migration. J Cell Sci. [Epub ahead of print]
Amber M. Papillion et al. Early derivation of IgM memory cells and bone marrow plasmablasts. PLoS One 12(6):e0178853, 2017.
Petya D. Radoeva et al. Longitudinal study of cerebral surface morphology in youth with 22q11.2 deletion syndrome, and association with positive symptoms of psychosis. J Child Psychol Psychiatry 58(3):305-314, 2017.
Stuti Sharma and S. Wilkens. Biolayer Interferometry of Lipid Nanodisc-Reconstituted Yeast Vacuolar H+ -ATPase . Protein Sci. [Epub ahead of print]
Nicholas J. Stam and S. Wilkens. Structure of Nanodisc Reconstituted Vacuolar ATPase Proton Channel: Definition of the Interaction of Rotor and Stator and Implications for Enzyme Regulation by Reversible Dissociation. J Biol Chem. 292(5):1749-1761, 2017.
Patrick Sweeney and Y. Yang. HFD-induced energy states-dependent bidirectional control of anxiety levels in mice. Int J Obes (Lond) [Epub ahead of print]
Patrick Sweeney and Y. Yang. Neural Circuit Mechanisms Underlying Emotional Regulation of Homeostatic Feeding. Trends Endocrinol Metab . [Epub ahead of print]
Daniel S. Tylee et al. Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined-samples mega-analysis. Am J Med Genet B Neuropsychiatr Genet 174(3):181-201, 2017.

2016

Christopher M. Bartlow et al.. PTH(1-34) and zoledronic acid have differing longitudinal effects on juvenile mouse femur strength and morphology. J Orthop Res. [Epub ahead of print]
Adam Blanden et al.Corrigendum to "Reactivating mutant p53 using small molecules as zinc metallochaperones: awakening a sleeping giant in cancer." Drug Discov Today 21(10):1728, 2016.
Olesea Cojohari et al. Human cytomegalovirus induces an atypical activation of Akt to stimulate the survival of short-lived monocytes. J Virol. 90(14):6443-52(2016).
Ori S. Cohen et al. A splicing-regulatory polymorphism in DRD2 disrupts ZRANB2 binding, impairs cognitive functioning and increases risk for schizophrenia in six Han Chinese samples . Mol Psychiatry. 21(7):975-82 (2016).
Sergio Couoh-Cardel et al. Yeast V-ATPase Proteolipid Ring Acts as a Large-conductance Transmembrane Protein Pore . Sci Rep. 6:24774 (2016).
Agnik Dasgupta and Jeffrey D. Amack. Cilia in vertebrate left-right patterning . Philos Trans R Soc Lond B Biol Sci. 371(1710), 2016.
Avik Dutta et al. STAT3 mutations are not sufficient to induce large granular lymphocytic leukaemia in mice . Br J Haematol. 2016 Dec 26;. [Epub ahead of print]
Jason J. Gokey et al. A Kupffer's vesicle size threshold for robust left-right patterning of the zebrafish embryo. Dev Dyn 245(1):22-33 (2016).
Gregory J. Goreczny et al. Hic-5 remodeling of the stromal matrix promotes breast tumor progression. Oncogene [Epub ahead of print]
Anna Hegsted et al. NF2- and FHOD-related formins promote ovulation in the somatic gonad of C. elegans. Cytoskeleton (Hoboken) 73(12):712-728, 2016.
Jonathan L. Hess et al. The influence of genes on "positive valence systems" constructs: A systematic review. Am J Med Genet B Neuropsychiatr Genet. 171(1):92-110 (2016).
William C. Hilinski et al. Lmx1b is required for the glutamatergic fates of a subset of spinal cord neurons . Neural Dev. 11(1):16, 2016.
Andrew E. Jacob et al. Evolution and Expression of Paxillin Genes in Teleost Fish . PLoS One 11:11, 2016.
Yongchang Ji et al. Mutations in zebrafish pitx2 model congenital malformations in Axenfeld-Rieger syndrome but do not disrupt left-right placement of visceral organs . Dev Biol. 416(1):69-81, 2016
Dawn B. Lammert and B.W. Howell. RELN Mutations in Autism Spectrum Disorder. Front Cell Neurosci. 10:84 (2016).
Chris Lucchesi et al. Negative regulation of RNA-binding protein HuR by tumor-suppressor ECRG2. Oncogene 35(20):2565-73 (2016).
Zahra I Motahari et al. Tbx3 represses bmp4 expression and with Pax6 is required and sufficient for retina formation . Development 143(19):3560-3572, 2016.
Zachary Oaks et al. Mitochondrial dysfunction in the liver and antiphospholipid antibody production precede disease onset and respond to rapamycin in lupus-prone mice . Arthritis Rheumatol. 68(11):2728-2739, 2016.
Zachary Oaks et al. Activation of the Mechanistic Target of Rapamycin in SLE: Explosion of Evidence in the Last Five Years . Curr Rheumatol Rep. 18(12):73, 2016
Zachary Oaks et al.Mitochondrial Dysfunction in the Liver and Antiphospholipid Antibody Production Precede Disease Onset and Respond to Rapamycin in Lupus-Prone Mice . Arthritis Rheumatol. 68(11):2728-2739, 2016.
Jessica Ouderkirk-Pecone et al. Myosin 1e promotes breast cancer malignancy by enhancing tumor cell proliferation and stimulating tumor cell de-differentiation . Oncotarget 7(29):46419-46432, 2016.
Jameson Patak et al. Endosomal System Genetics and Autism Spectrum Disorders: A Literature Review . Neurosci Biobehav Rev 65:95-112 (2016).
Jameson Patak et al. SLC9A9 Co-expression modules in autism-associated brain regions. Autism Res. 2016 [Epub ahead of print]
Jie Peng and W. Feng. Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability. Nucleic Acids Res.44(21):10216-10229, 2016.
Megan Peppenelli et al. Human cytomegalovirus stimulates the synthesis of select Akt-dependent antiapoptotic proteins during viral entry to promote survival of infected monocytes. J Virol. 90(6):3138-47 (2016).
Petya D. Radoeva et al. Longitudinal study of premorbid adjustment in 22q11.2 deletion (velocardiofacial) syndrome and association with psychosis. Dev Psychopathol. 11:1-14 (2016).
Jacqualyn J. Schulman et al. The Stability and Expression Level of Bok is Governed by Binding to Inositol 1,4,5-trisphosphate Receptors . J Biol Chem. 291(22):11820-8 (2016).
Patrick Sweeney et al. Activation of hypothalamic astrocytes suppresses feeding without altering emotional state s. Glia. 64(12):2263-2273, 2016.
Patrick Sweeney and Y. Yang. An Inhibitory Septum to Lateral Hypothalamus Circuit That Suppresses Feeding . J Neurosci. 36(44):11185-11195, 2016.
Patrick Sweeney et al. Caffeine increases food intake while reducing anxiety-related behaviors . Appetite 101:171-7 (2016).
Daniel S. Tylee et al. RNA sequencing of transformed lymphoblastoid cells from siblings discordant for autism spectrum disorders reveals transcriptomic and functional alterations: Evidence for sex-specific effects. Autism Res 174(3):181-201, 2016.
Joel R. Wilmore et al. Plasmodium chabaudi infection induces AID expression in transitional and marginal zone B cells . Immun Inflamm Dis. 2016 Nov 28;4(4):497-505.
Forrest A. Wright and R.J. Wojcikiewicz. Chapter 4 - Inositol 1,4,5-Trisphosphate Receptor Ubiquitination. Prog Mol Biol Transl Sci. 141:141-59 (2016).
Qin Xu et al. Specificity of the Connexin W3/4 locus for Functional Gap Junction Formation . Channels (Austin) 15:1-13, 2016.
Qin Xu et al. Changes in cardiac NaV1.5 expression, function, and acetylation by pan-histone deacetylase inhibitors. Am J Physiol Heart Circ Physiol. 311(5):H1139-H1149, 2016.
Lina Yang et al. Autism spectrum disorder traits in Slc9a9 knock-out mice . Am J Med Genet B Neuropsychiatr Genet. 171(3):363-76 (2016).
Yue Yang et al. Loss of Ezh2 cooperates with Jak2V617F in the development of myelofibrosis in a mouse model of myeloproliferative neoplasm . Blood 127(26):3410-23, 2016.
Lala Zafreen et al. In-vitro, SDH5-dependent flavinylation of immobilized human respiratory complex II flavoprotein . Arch Biochem Biophys. 604:47-56, 2016.
Mark Zarella and D. Ts’o. Cue combination encoding via contextual modulation of V1 and V2 neurons . Eye Brain. 21;8:177-193, 2016.

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