Student Publications

The following are recent first-author publications in books and professional journals by Upstate students. Doctoral students in the College of Graduate Studies who finished in 2013-2014 and 2014-2015 published on average 3.7 publications (with 1.9 being first author) that are indexed on Pub Med. On average, these publications have been cited 23 times.

2019

Ashleigh Jackobel et al. DNA binding preferences of S. cerevisiae RNA polymerase I Core Factor reveal a preference for the GC-minor groove and a conserved binding mechanism. Biochim Biophys Acta Gene Regul Mech. 2019 Aug 2:194408. doi: 10.1016/j.bbagrm.2019.194408.
Cameron MacQuarrie et al. Adaptor protein Bbc1 regulates localization of Wsp1 and Vrp1 during endocytic actin patch assembly. J Cell Sci. 2019 Aug 7. pii: jcs.233502. doi: 10.1242/jcs.233502.
Jameson Patak et al. MAGEL2-Related Disorders: A study and case series. Clin Genet. 2019 Aug 9. doi: 10.1111/cge.13620.
Anna Hegsted et al. Functional importance of an inverted formin C-terminal tail at morphologically dynamic epithelial junctions. Cytoskeleton (Hoboken). 2019 Jun 19.
Erica Colicino et al. Chromosome misalignment is associated with PLK1 activity at cenexin-positive mitotic centrosomes. Mol Biol Cell. 2019 May 1:mbcE18120817. doi: 10.1091/mbc.E18-12-0817.
Jacqualyn Schulman et al. Bok regulates mitochondrial fusion and morphology. Cell Death Differ. 2019 Apr 11. doi: 10.1038/s41418-019-0327-4.
Eric Miller et al. The carboxy-terminus of the formin FMNL1ɣ bundles actin to potentiate adenocarcinoma migration. J Cell Biochem. 2019 Apr 11. doi: 10.1002/jcb.28694.
Siyu Wei et al. Calcium-Calmodulin Gating of a pH-insensitive isoform of Connexin43 Gap Junctions. Biochem J. 2019 Mar 25. pii: BCJ20180912. doi: 10.1042/BCJ20180912.
Stuti Sharma et al. Functional reconstitution of vacuolar H+-ATPase from Vo proton channel and mutant V1-ATPase provides insight into the mechanism of reversible disassembly. J Biol Chem. 2019 Feb 21. pii: jbc.RA119.007577. doi: 10.1074/jbc.RA119.007577.
Zachary Oaks et al. Clinical utility of the cold pressor test: evaluation of pain patients, treatment of opioid-induced hyperalgesia and fibromyalgia with low dose naltrexone. Discov Med. 2018 Nov;26(144):197-206.
Rebecca Sager et al. Post-translational Regulation of FNIP1 Creates a Rheostat for the Molecular Chaperone Hsp90. Cell Rep. 2019 Jan 29;26(5):1344-1356.e5. doi: 10.1016/j.celrep.2019.01.018.
Aaron Altman et al. HCMV modulation of cellular PI3K/AKT/mTOR signaling: New opportunities for therapeutic intervention? Antiviral Res. 2019 Jan 19. pii: S0166-3542(18)30711-3. doi: 10.1016/j.antiviral.2019.01.009. [Epub ahead of print].
Daria LaRocca et al. Comparison of serum and saliva miRNAs for identification and characterization of mTBI in adult mixed martial arts fighters. PLoS One. 2019 Jan 2;14(1):e0207785. doi: 10.1371/journal.pone.0207785. eCollection 2019.

2018

Erica Colicino et al. Regulating a key mitotic regulator, Polo-like Kinase 1 (PLK1) Cytoskeleton (Hoboken). 2018 Nov 10. doi: 10.1002/cm.21504. [Epub ahead of print].
Rebecca Sager et al. The mTOR Independent Function of Tsc1 and FNIPs. Trends Biochem Sci. 2018 Oct 22. pii: S0968-0004(18)30203-2. doi: 10.1016/j.tibs.2018.09.018. [Epub ahead of print].
Disharee Nath et al. Identification, Histological Characterization, and Dissection of Mouse Prostate Lobes for In Vitro 3D Spheroid Culture Models.J Vis Exp. 2018 Sep 18;(139). doi: 10.3791/58397.
Shangdong Guo et al. Novel mechanisms of regulation of the expression and transcriptional activity of hepatocyte nuclear factor 4α J Cell Biochem. 2018 Sep 7. doi: 10.1002/jcb.27407. [Epub ahead of print]
Xian Zhang et al. Differences in Functional Expression of Connexin43 and NaV1.5 by Pan- and Class-Selective Histone Deacetylase Inhibition in Heart. Int J Mol Sci. 2018 Aug 4;19(8). pii: E2288. doi: 10.3390/ijms19082288. [Epub ahead of print]
Forrest Wright et al. The erlin2 T65I mutation inhibits erlin1/2 complex mediated-inositol 1,4,5-trisphosphate receptor ubiquitination and phosphatidylinositol 3-phosphate binding. J Biol Chem. 2018 Aug 22. pii: jbc.RA118.004547. doi: 10.1074/jbc.RA118.004547. [Epub ahead of print]
Megan Peppenelli et al. Aberrant regulation of the Akt signaling network by human cytomegalovirus allows for targeting of infected monocytes. Antiviral Res. 2018 Jul 25;158:13-24. doi: 10.1016/j.antiviral.2018.07.015. [Epub ahead of print]
Scott Michenberg et al. Systemic lupus erythematosus-myasthenia gravis overlap syndrome: Presentation and treatment depend on prior thymectomy. Clin Immunol. 2018 Sep;194:100-104. doi: 10.1016/j.clim.2018.07.007. Epub 2018 Jul 17. [Epub ahead of print]
Kevin Kenderes et al. T-Bet+ IgM Memory Cells Generate Multi-lineage Effector B Cells. Cell Rep.2018 Jul 24;24(4):824-837.e3. doi: 10.1016/j.celrep.2018.06.074 [Epub ahead of print]
Saptarshi Biswas et al. Laminin-dystroglycan signaling regulates retinal arteriogenesis. FASEB J. 2018 Jun 6;:fj201800232R. [Epub ahead of print]
Dmitri Serjanov et al. Laminin β2 Chain Regulates Retinal Progenitor Cell Mitotic Spindle Orientation via Dystroglycan. J Neurosci. 2018 May 31. pii: 0551-18. doi: 10.1523/JNEUROSCI.0551-18.2018. [Epub ahead of print]
Heather Nelson et al. Interplay between ER Ca²⁺ Binding Proteins, STIM1 and STIM2, Is Required for Store-Operated Ca²⁺ Entry. Int J Mol Sci. 2018 May 19;19(5).
Stuti Sharma et al. MgATP hydrolysis destabilizes the interaction between subunit H and yeast V1-ATPase, highlighting H's role in V-ATPase regulation by reversible disassembly. J Biol Chem. 2018 May 12;. [Epub ahead of print]
Anushree Gulvady et al. Hic-5 Expression is a Major Indicator of Cancer Cell Morphology, Migration and Plasticity in Three-Dimensional Matrices. Mol Biol Cell. 2018 May 17:mbcE18020092. doi: 10.1091/mbc.E18-02-0092. [Epub ahead of print]
Nick Huang et al. Metabolism as a Target for Modulation in Autoimmune Diseases. Trends Immunol. 2018 May 5;. [Epub ahead of print]
Rebecca Sager et al. Sporadic renal angiomyolipoma in a patient with Birt-Hogg-Dubé: chaperones in pathogenesis. Oncotarget. 2018 Apr 24;9(31):22220-22229.
Mansi Babbar et al. CHTM1, a novel metabolic marker deregulated in human malignancies. Oncogene [Epub ahead of print].
Agnik Dasgupta et al. Cell volume changes contribute to epithelial morphogenesis in zebrafish Kupffer's vesicle. Elife Jan 29;7, 2018.
Gregory J Goreczny et al. Hic-5 regulates fibrillar adhesion formation to control tumor extracellular matrix remodeling through interaction with tensin1. Oncogene [Epub ahead of print]
Shangdong Guo et al. Conjunction of G-quadruplex and stem-loop in the 5' untranslated region of mouse hepatocyte nuclear factor 4-alpha1 mediates strong inhibition of protein expression. Mol Cell Biochem. [Epub ahead of print]
Renyan Liu et al. Monoglyceride lipase gene knockout in mice leads to increased incidence of lung adenocarcinoma. Cell Death Dis. 9(2):36, 2018.
Samuel J. Mackenzie et al. Cauda equina repair in the rat: Part 3. Axonal regeneration across Schwann cell seeded collagen foam. Muscle Nerve 57(1):E78-E84, 2018.
Heather Nelson et al. Molecular physiology and pathophysiology of stromal interaction molecules. Exp Biol Med [Epub ahead of print]
Rebecca A. Sager et al. Detecting Posttranslational Modifications of Hsp90. Methods Mol Biol. 1709:209-219, 2018.
Marissa Smith et al. Reconstitution of RNA Polymerase I Upstream Activating Factor and the Roles of Histones H3 and H4 in Complex Assembly. J Mol Biol. [Epub ahead of print]

Student Publications of 2017

Parisa Afshari et al. Reduced Slc1a1 expression is associated with neuroinflammation and impaired sensorimotor gating and cognitive performance in mice: Implications for schizophrenia. PLoS One Sep 8;12(9):e0183854, 2017.
Subhrajit Banerjee and P.M. Kane. Direct interaction of the Golgi V-ATPase a-subunit isoform with PI(4)P drives localization of Golgi V-ATPases in yeast. Mol Biol Cell 15;28(19):2518-2530, 2017.
Christopher M. Bartlow et al. PTH(1-34) and zoledronic acid have differing longitudinal effects on juvenile mouse femur strength and morphology. J Orthop Res. 35(8):1707-1715, 2017.
Saptarshi Biswas et al. Laminin-Dependent Interaction between Astrocytes and Microglia: A Role in Retinal Angiogenesis. Am J Pathol. 187(9):2112-2127, 2017.
Maria Camargo Moreno et al. Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder. PLoS One 12(7):e0180873, 2017.
Erica G. Colicino et al. Gravin regulates centrosome function through PLK1. Mol Biol Cell. [Epub ahead of print]
Liam P. Coyne and X.J. Chen. mPOS is a novel mitochondrial trigger of cell death - implications for neurodegeneration. FEBS Lett. [Epub ahead of print]
Karen I. Cyndari et al. Peri-Implant Distribution of Polyethylene Debris in Postmortem-Retrieved Knee Arthroplasties: Can Polyethylene Debris Explain Loss of Cement-Bone Interlock in Successful Total Knee Arthroplasties? J Arthroplasty 32(7):2289-2300, 2017.
Natela Dushukyan et al. Phosphorylation and Ubiquitination Regulate Protein Phosphatase 5 Activity and Its Prosurvival Role in Kidney Cancer. Cell Rep. 21(7):1883-1895, 2017.
Avik Dutta et al. Hmga2 promotes the development of myelofibrosis in Jak2V617F knock-in mice by enhancing TGF-β1 and Cxcl12 pathways. Blood 130(7):920-932, 2017.
Ivayla I Geneva et al. Untangling ciliary access and enrichment of two rhodopsin-like receptors using quantitative fluorescence microscopy reveals cell-specific sorting pathways. Mol Biol Cell 15;28(4):554-566, 2017.
Gregory J. Goreczny et al. Hic-5 remodeling of the stromal matrix promotes breast tumor progression. Oncogene 36(19):2693-2703, 2017.
Matthew Gumbleton et al. Dual enhancement of T and NK cell function by pulsatile inhibition of SHIP1 improves antitumor immunity and survival. Sci Signal. Oct 10;10(500), 2017
Dandan Guo et al.Riboflavin-containing telodendrimer nanocarriers for efficient doxorubicin delivery: High loading capacity, increased stability, and improved anticancer efficacy. Biomaterials 141:161-175, 2017.
Shangdong Guo and H. Lu. Conjunction of potential G-quadruplex and adjacent cis-elements in the 5' UTR of hepatocyte nuclear factor 4-alpha strongly inhibit protein expression. Sci Rep. 12;7(1):17444, 2017.
Anna Hegsted et al. Inverted formins: A subfamily of atypical formins. Cytoskeleton (Hoboken) 74(11):405-419, 2017.
Jonathan Hess et al. Why is there selective subcortical vulnerability in ADHD? Clues from postmortem brain gene expression data. Mol Psychiatry [Epub ahead of print]
Ashleigh J. Jackobel et al. Breaking the mold: structures of the RNA polymerase I transcription complex reveal a new path for initiation. Transcription [Epub ahead of print]
Andrew E. Jacob et al. Paxillin genes and actomyosin contractility regulate myotome morphogenesis in zebrafish. Dev Biol 425(1):70-84, 2017.
Fatoumata Jobe et al. Deletion of Ptpn1 induces myeloproliferative neoplasm. Leukemia 31(5):1229-1234, 2017.
Joshua M. Karchin et al. Small Molecule-Induced Domain Swapping as a Mechanism for Controlling Protein Function and Assembly. Sci Rep. 7: 44388, 2017.
Dawn B. Lammert et al. The de novo Autism Spectrum Disorder RELN R2290C Mutation Reduces Reelin Secretion and Increases Protein Disulfide Isomerase Expression. J Neurochem. 142(1):89-102, 2017.
Kelly Ledford et al. Distinct cis-acting regions control six6 expression during eye field and optic cup stages of eye formation. Dev Biol. 426(2):418-428, 2017.
Megan Lloyd et al. Targeting the alternative sigma factor RpoN to combat virulence in Pseudomonas aeruginosa. Sci Rep. 7(1):12615, 2017.
Matthew R. Miller et al. Non-canonical activity of the podosomal formin FMNL1γ supports immune cell migration. J Cell Sci. 130(10):1730-1739, 2017.
Scott B. Minchenberg and Paul T. Massa. The control of oligodendrocyte bioenergetics by interferon-gamma (IFN-γ) and Src homology region 2 domain-containing phosphatase-1 (SHP-1). J Neuroimmunol. [Epub ahead of print]
Amber M. Papillion et al. Early derivation of IgM memory cells and bone marrow plasmablasts. PLoS One 12(6):e0178853, 2017.
Jameson Patak et al. SLC9A9 Co-expression modules in autism-associated brain regions. Autism Res. 10(3):414-429, 2017.
Petya D. Radoeva et al. Longitudinal study of cerebral surface morphology in youth with 22q11.2 deletion syndrome, and association with positive symptoms of psychosis. J Child Psychol Psychiatry 58(3):305-314, 2017.
Md. Mamunur Rashid et al. Neural-specific deletion of the focal adhesion adaptor protein paxillin slows migration speed and delays cortical layer formation. Development 144(21):4002-4014, 2017.
Rebecca Sager et al. Tumor suppressor Tsc1 is a new Hsp90 co-chaperone that facilitates folding of kinase and non-kinase clients. EMBO J. 36(24):3650-3665, 2017.
Karin M. Schneider et al. The influence of macrophage growth factors on Theiler's Murine Encephalomyelitis Virus (TMEV) infection and activation of macrophages. Cytokine [Epub ahead of print]
Stuti Sharma and S. Wilkens. Biolayer Interferometry of Lipid Nanodisc-Reconstituted Yeast Vacuolar H+ -ATPase. Protein Sci. 26(5):1070-1079, 2017.
Nicholas J. Stam and S. Wilkens. Structure of Nanodisc Reconstituted Vacuolar ATPase Proton Channel: Definition of the Interaction of Rotor and Stator and Implications for Enzyme Regulation by Reversible Dissociation. J Biol Chem. 292(5):1749-1761, 2017.
Patrick Sweeney et al. Appetite suppressive role of medial septal glutamatergic neurons. Proc Natl Acad Sci U S A. 114(52):13816-13821, 2017.
Patrick Sweeney and Y. Yang. HFD-induced energy states-dependent bidirectional control of anxiety levels in mice. Int J Obes (Lond) 41(8):1237-1245, 2017.
Patrick Sweeney and Y. Yang. Neural Circuit Mechanisms Underlying Emotional Regulation of Homeostatic Feeding. Trends Endocrinol Metab. 28(6):437-448, 2017.
Daniel S. Tylee et al. Machine-learning classification of 22q11.2 deletion syndrome: A diffusion tensor imaging study. Neuroimage Clin 15:832-842, 2017.
Daniel S. Tylee et al. Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined-samples mega-analysis. Am J Med Genet B Neuropsychiatr Genet 174(3):181-201, 2017.
Swetha Devi Velivela and PM Kane. Compensatory Internalization of Pma1 in V-ATPase Mutants in Saccharomyces cerevisiae Requires Calcium- and Glucose-Sensitive Phosphatases. Genetics. [Epub ahead of print]
Eric M. Wohlford et al. Changes in tonsil B cell phenotypes and EBV receptor expression in children under 5 years old. Cytometry B Clin Cytom. [Epub ahead of print]
Mark Zarella and D. Ts’o. Contextual modulation revealed by optical imaging exhibits figural asymmetry in macaque V1 and V2. Eye Brain 9:1-12, 2017.

More Student First-Author Publications